publisher search block error

You need to enable the search module then you can choose it in Blocks

To see the search block, you need to enable search module and then choose it in Blocks.

Regarding orange bar with links, please replace this following code in your style.css file:

/*
** menu
*/
#header ul#menu {
position: relative;
float: left;
list-style: none;
width: 927px;
margin: 136px 0 0 13px;
padding: 0 0 0 15px;
background: transparent url("images/menu_background.png") no-repeat 0 0;
}
#header ul#menu li {
float: left;
position: relative;
z-index: 4;
margin-left: -1px;
background: transparent url("images/separator_0.png") no-repeat 100% 50%;
}
#header ul#menu li.last {
background-image: none;
}
#header ul#menu li a {
display: block;
padding-left: 10px;
color: #FFFFFF;
text-decoration: none;
font-weight: 700;
}
#header ul#menu li a span {
display: block;
padding-right: 13px;
line-height: 45px;
cursor: pointer;
}
#header ul#menu li a.submenu, #header ul#menu li a:focus, #header ul#menu
li a:hover {
background: transparent url("images/menu_item_on_start.png") no-repeat 0
100%;
color: #214361;
text-decoration: none;
}
#header ul#menu li a.submenu span, #header ul#menu li a:focus span,
#header ul#menu li a:hover span {
background: transparent url("images/menu_item_on_end.png") no-repeat 100%
100%;
}

#header ul#menu li ul {
position: absolute;
left: -999em;
list-style: none;
width: 197px;
margin:0px;
padding:0px;
}
#header ul#menu li ul li ul {
margin: 0px 0 0 0;
}
#header ul#menu li ul li ul {
margin: 0px 0 0 0;
}
#header ul#menu li ul li {
float: left;
width: 197px;
margin: 0;
background: #FFFFFF url("images/submenu_middle.png") repeat-y 0 0;
}
#header ul#menu li ul li.last {
padding: 0 0 15px 0;
background: transparent url("images/submenu_bottom.png") no-repeat left
bottom;
float: left;
width: 197px;
margin: 0;
}
#header ul#menu li ul li a {
padding: 0 20px;
border-bottom: 1px solid #E8ECEF;
background: none;
color: #214361;
font-size: .91em;
font-weight: 700;
line-height: 2.5;
}
#header ul#menu li ul li a:focus, #header ul#menu li ul li a:hover {
background: none;
color: #EC6109;
text-decoration: underline;
}
#header ul#menu li ul li.last a {
border-bottom: none;
}

#header ul#menu li:hover ul {
left: -1px;
display:block;
z-index: 50;
}

#header ul#menu li ul li ul{
top:0px;
left:196px;
z-index:50px;
display:none;
}

#header ul#menu li:hover ul li ul{
padding:4px 0 0 0;
display:none;
}
#header ul#menu li:hover ul li:hover ul li ul,
#header ul#menu li:hover ul li:hover ul li:hover ul li ul,
#header ul#menu li:hover ul li:hover ul li:hover ul li:hover ul li ul{
padding:4px 0 0 0;
margin-top:-4px;
display:none;
}
#header ul#menu li:hover ul li:hover ul,
#header ul#menu li:hover ul li:hover ul li:hover ul,
#header ul#menu li:hover ul li:hover ul li:hover ul li:hover ul,
#header ul#menu li:hover ul li:hover ul li:hover ul li:hover ul li:hover ul{
display:block;
left:196px;
background:url(images/submenu_top.png) no-repeat left top;
z-index:9999;
}

#header ul#menu li ul li a.submenu:focus,
#header ul#menu li ul li a.submenu:hover,
#header ul#menu li ul li a.submenu:visited,
#header ul#menu li ul li a.submenu:link{
color:#EC6109;
text-decoration:underline; background: none;
display:block;
}

#header ul#menu li ul li.menuparent a:focus,
#header ul#menu li ul li.menuparent a:hover,
#header ul#menu li ul li.menuparent a:visited,
#header ul#menu li ul li.menuparent a:link{
background: transparent url("images/arrow_0.png") no-repeat 90% 50%;
}
#header ul#menu li ul li.menusubmenu a:focus,
#header ul#menu li ul li.menusubmenu a:hover,
#header ul#menu li ul li.menusubmenu a:visited,
#header ul#menu li ul li.menusubmenu a:link{
background: none;
}

and please add this css code in
style_ie6.css for the Internet explorer.

#header ul#menu li.hover ul {
left: -1px;
display:block;
z-index: 50;
}

#header ul#menu li.hover ul li ul{
padding:4px 0 0 0;
display:none;
}

#header ul#menu li.hover ul li.hover ul li ul,
#header ul#menu li.hover ul li.hover ul li.hover ul li ul,
#header ul#menu li.hover ul li.hover ul li.hover ul li.hover ul li ul{
padding:4px 0 0 0;
margin-top:-4px;
display:none;
}
#header ul#menu li.hover ul li.hover ul,
#header ul#menu li.hover ul li.hover ul li.hover ul,
#header ul#menu li.hover ul li.hover ul li.hover ul li.hover ul,
#header ul#menu li.hover ul li.hover ul li.hover ul li.hover ul li.hover ul{
display:block;
left:196px;
background:url(images/submenu_top.png) no-repeat left top;
z-index:9999;
}

Additionally, please replace the template.php file in publisher theme's folder on your drupal installation. You can download the file from the following link

http://dev.webserver9.com/publisher1/template...

This should solve your problem. However, if you still face any, please get back to us.